Package: copyseparator 1.2.0
copyseparator: Assembling Long Gene Copies from Short Read Data
Assembles two or more gene copies from short-read Next-Generation Sequencing data. Works best when there are only two gene copies and read length >=250 base pairs. High and relatively even coverage are important.
Authors:
copyseparator_1.2.0.tar.gz
copyseparator_1.2.0.zip(r-4.7-any)copyseparator_1.2.0.zip(r-4.6-any)copyseparator_1.2.0.zip(r-4.5-any)
copyseparator_1.2.0.tgz(r-4.6-any)copyseparator_1.2.0.tgz(r-4.5-any)
copyseparator_1.2.0.tar.gz(r-4.7-any)copyseparator_1.2.0.tar.gz(r-4.6-any)
copyseparator_1.2.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
copyseparator/json (API)
| # Install 'copyseparator' in R: |
| install.packages('copyseparator', repos = c('https://leiyang-fish.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/leiyang-fish/copyseparator/issues
Last updated from:cc291b63ed. Checks:7 WARNING, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | WARNING | 190 | ||
| source / vignettes | OK | 233 | ||
| linux-release | WARNING | 179 | ||
| macos-release | WARNING | 208 | ||
| macos-oldrel | WARNING | 211 | ||
| windows-devel | WARNING | 127 | ||
| windows-release | WARNING | 122 | ||
| windows-oldrel | WARNING | 108 | ||
| wasm-release | OK | 122 |
Exports:copy_assemblecopy_detectcopy_separatecopy_validatesep_assemsubset_downsize
Dependencies:ade4apeaskpassaudiobeeprBiocGenericsBiostringsclicodetoolscrayonDBIDECIPHERdigestdoParallelforeachgenericsglueIRangesiteratorskmerlatticelifecyclemagrittrMASSnlmeopensslphylogrampixmapRcppRcppArmadillorlangS4VectorssegmentedSeqinfoseqinrspstringistringrsysvctrsXVector
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| copy_assemble | copy_assemble |
| copy_detect | copy_detect |
| copy_separate | copy_separate |
| copy_validate | copy_validate |
| sep_assem | sep_assem |
| subset_downsize | subset_downsize |