Package: copyseparator 1.2.0
copyseparator: Assembling Long Gene Copies from Short Read Data
Assembles two or more gene copies from short-read Next-Generation Sequencing data. Works best when there are only two gene copies and read length >=250 base pairs. High and relatively even coverage are important.
Authors:
copyseparator_1.2.0.tar.gz
copyseparator_1.2.0.zip(r-4.5)copyseparator_1.2.0.zip(r-4.4)copyseparator_1.2.0.zip(r-4.3)
copyseparator_1.2.0.tgz(r-4.4-any)copyseparator_1.2.0.tgz(r-4.3-any)
copyseparator_1.2.0.tar.gz(r-4.5-noble)copyseparator_1.2.0.tar.gz(r-4.4-noble)
copyseparator_1.2.0.tgz(r-4.4-emscripten)copyseparator_1.2.0.tgz(r-4.3-emscripten)
copyseparator.pdf |copyseparator.html✨
copyseparator/json (API)
NEWS
# Install 'copyseparator' in R: |
install.packages('copyseparator', repos = c('https://leiyang-fish.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/leiyang-fish/copyseparator/issues
Last updated 3 months agofrom:8046ae6369. Checks:OK: 1 WARNING: 6. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Oct 30 2024 |
R-4.5-win | WARNING | Oct 30 2024 |
R-4.5-linux | WARNING | Oct 30 2024 |
R-4.4-win | WARNING | Oct 30 2024 |
R-4.4-mac | WARNING | Oct 30 2024 |
R-4.3-win | WARNING | Oct 30 2024 |
R-4.3-mac | WARNING | Oct 30 2024 |
Exports:copy_assemblecopy_detectcopy_separatecopy_validatesep_assemsubset_downsize
Dependencies:ade4apeaskpassaudiobeeprBiocGenericsBiostringsclicodetoolscrayoncurlDBIDECIPHERdigestdoParallelforeachGenomeInfoDbGenomeInfoDbDatagluehttrIRangesiteratorsjsonlitekmerlatticelifecyclemagrittrMASSmimenlmeopensslphylogrampixmapR6RcppRcppArmadillorlangS4VectorssegmentedseqinrspstringistringrsysUCSC.utilsvctrsXVectorzlibbioc
Readme and manuals
Help Manual
Help page | Topics |
---|---|
copy_assemble | copy_assemble |
copy_detect | copy_detect |
copy_separate | copy_separate |
copy_validate | copy_validate |
sep_assem | sep_assem |
subset_downsize | subset_downsize |